Correct answer: All the charges
In Gauss's law, the net flux equals q_enclosed/epsilon0 and depends only on the charge inside. However, the electric field vector E at any point on the Gaussian surface is the total field due to ALL charges - both inside and outside the surface. Contributions of external charges cancel out in the net flux integral, but they still contribute to E itself. Hence the field in the flux integrand is due to all the charges.